Visualisation

Cis-quantification

“The expected amount of intra-chromosomal contacts is in the range of 90-93%. Assuming extra inter-chromosomal contacts are due to debris/noise, the user might aspire to get the cis-percentages as close to 90% as possible.” (https://github.com/robinweide/GENOVA/blob/master/vignettes/GENOVA_vignette.pdf)

RCP

Relative Contact Probability (RCP), contact probability as a function of genomic distance

Compartment scores

Saddle plot

Compartment strength

Interaction plots

Cis compartment plot - observed over expected

Domainogram

Computing the insulation score