Info

General info:

  • Differential expression analysis using limma/voom
  • Some values have been rounded

Datasets analysed:

  • mirna smrnaseq: TRUE
  • mirna excerpt: TRUE
  • pirna excerpt: FALSE
  • trna excerpt: TRUE
  • circrna excerpt: FALSE
  • gencode excerpt: TRUE

Treatment comparisons:

  • treatment1 - treatment2
  • treatment1 - treatment3

Total number of samples: 12

Number of samples in each treatment group:

  • treatment1: 4
  • treatment2: 4
  • treatment3: 4

Volcano plots

These plots plot the negative log of the p-value against the log fold change. RNA’s with a p-value smaller than 0.1 and a log fold change greater/smaller than +- log2(1.1) are plotted here.

Blue: RNA’s with an adjusted p-value smaller than 0.1 and a log fold change greater/smaller than +-log2(1.1)

Red: RNA’s with an adjusted p-value smaller than 0.1 and a log fold change greater/smaller than +-log2(1.1)

Yellow: RNA’s with an adjusted p-value smaller than 0.05 and a log fold change greater/smaller than +-log2(1.1)

Green: RNA’s with an adjusted p-value smaller than 0.01 and a log fold change greater/smaller than +-log2(1.1)

treatment1 - treatment2

miRNA’s (smrnaseq)

miRNA’s (excerpt)

tRNA’s (excerpt)

gencodes (excerpt)

treatment1 - treatment3

miRNA’s (smrnaseq)

miRNA’s (excerpt)

tRNA’s (excerpt)

gencodes (excerpt)

 

Generated by ESR Genomics

www.esr.cri.nz