Info

General info:

  • The pie charts present only the RNA’s from the datasets the user has chosen to analyse and RNA’s that have been identified by the pipelines, rather than all the RNA’s possibly present in the samples
  • For each combination of sample, treatment and pipeline, the total number of RNA counts are calculated for each RNA species, then the average of this is taken for each treatment group/pipeline comination to calculate the average raw count (‘Average raw count’) in a given sample
  • Then for each combination of treatment and pipeline, the average total RNA’s identified are calculated (by summing ‘Average raw count’). This is then used to calculate the ‘Percentage of average number of all RNA’s identified’ of an RNA species for a given sample
  • Values have been rounded

Datasets analysed:

  • mirna smrnaseq: TRUE
  • mirna excerpt: TRUE
  • pirna excerpt: FALSE
  • trna excerpt: TRUE
  • circrna excerpt: FALSE
  • gencode excerpt: TRUE

Total number of samples: 12

Number of samples in each treatment group:

  • treatment1: 4
  • treatment2: 4
  • treatment3: 4

RNA species composition

smrnaseq

excerpt

 

Generated by ESR Genomics

www.esr.cri.nz