05 - We want more!

Before going full ham creating a Snakemake workflow, it’s a good idea to see if someone has already made what you were thinking of creating! Have a look at all the results that were returned by searching “rna pipeline snakemake” in github. If it doesn’t do exactly what you want, you can fork it and adapt the workflow to your use
Snakemake provides incredible documentation and there is an insane amount more you can do with Snakemake beyond what was covered here
Snakemake also provides a great tutorial (and a short tutorial for those pressed for time)
Here is a fully established pipeline in production use that extends on the workflow we created in this workshop: https://github.com/ESR-NZ/human_genomics_pipeline
See https://github.com/snakemake-workflows for a bunch of genetics related snakemake workflows. Despite being genetics focussed, they provide a good place to see what can be done with a Snakemake workflow